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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11502790_11503628_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11502790 - 11503628
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GATACTAGAACT
Flanking Amino Acid:
TDYYVNMKFKEEDLQEMEDS
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.4
0.55
1
68.4
41.9
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
49.3
0.03
1.8
69.24
40.7

Associated Gene:

Gene:
MPP4
Ensembl Gene ID:
ENSAPLG00000009743
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044348
11502598 - 11522288
19691
ENSAPLT00000040303
11502598 - 11522288
19691
ENSAPLT00000026246
11502598 - 11522288
19691
ENSAPLT00000010168
11502598 - 11522288
19691
ENSAPLT00000044940
11502598 - 11522288
19691