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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11508677_11514249_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11508677 - 11514249
Intron Length:
5573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTGAGTA
5'SS Class:
major
3'SS Sequence:
ATCATATGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
AACACCTCAAAA
Flanking Amino Acid:
FQPHLCLKSSILEEDILGYR
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1
65.9
33
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
65.5
0.35
1
62.9
42.6
Minor 5ss
37.1
-1.5
3.5
50.8
46.1
Minor BPS
49.7
-0
1.7
57.94
40.7

Associated Gene:

Gene:
MPP4
Ensembl Gene ID:
ENSAPLG00000009743
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044940
11502598 - 11522288
19691
ENSAPLT00000044348
11502598 - 11522288
19691
ENSAPLT00000026246
11502598 - 11522288
19691