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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11514313_11515460_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11514313 - 11515460
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
GLIPSNHLLKRKQREFWWSQ
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.2
0.79
0.8
80.7
31.3
Minor 5ss
31
-2.2
3.2
38.7
46.6
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
MPP4
Ensembl Gene ID:
ENSAPLG00000009743
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026246
11502598 - 11522288
19691
ENSAPLT00000010168
11502598 - 11522288
19691
ENSAPLT00000044940
11502598 - 11522288
19691
ENSAPLT00000044348
11502598 - 11522288
19691