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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11515413_11515460_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11515413 - 11515460
Intron Length:
48

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAG
5'SS Class:
strong_major
3'SS Sequence:
AAAAATAATCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CAGTCCAAAAAT
Flanking Amino Acid:
GLIPSNHLLKSYSAFFWVLI
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
53.4
0.08
1.1
41.7
46.2
Minor 5ss
31
-2.2
3.2
38.7
46.6
Minor BPS
46.5
-0.1
2
63.31
46.2

Associated Gene:

Gene:
MPP4
Ensembl Gene ID:
ENSAPLG00000009743
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040303
11502598 - 11522288
19691