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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11516181_11516655_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11516181 - 11516655
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTTAAT
5'SS Class:
major
3'SS Sequence:
TTTAATCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTAATC
Flanking Amino Acid:
LEPEQVINILALSQGTIMFK
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
74.3
35.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.4
0.53
0.9
71.3
39.4
Minor 5ss
43.7
-0.7
2.6
56.6
43
Minor BPS
87.5
1.16
0.8
90.01
23.7

Associated Gene:

Gene:
MPP4
Ensembl Gene ID:
ENSAPLG00000009743
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010168
11502598 - 11522288
19691
ENSAPLT00000044940
11502598 - 11522288
19691
ENSAPLT00000044348
11502598 - 11522288
19691
ENSAPLT00000040303
11502598 - 11522288
19691
ENSAPLT00000026246
11502598 - 11522288
19691