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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11516742_11517622_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11516742 - 11517622
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTCCTTATAG
Flanking Amino Acid:
VINGGLADRSGLLYAGDKLV
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.5
31.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
89.3
0.88
0.6
85
22.8
Minor 5ss
45.5
-0.5
2.5
56.3
43.3
Minor BPS
69.3
0.47
1.8
76.89
40.3

Associated Gene:

Gene:
MPP4
Ensembl Gene ID:
ENSAPLG00000009743
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026246
11502598 - 11522288
19691
ENSAPLT00000010168
11502598 - 11522288
19691
ENSAPLT00000044940
11502598 - 11522288
19691
ENSAPLT00000044348
11502598 - 11522288
19691
ENSAPLT00000040303
11502598 - 11522288
19691