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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11532253_11534300_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11532253 - 11534300
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTATTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AGATATATAACT
Flanking Amino Acid:
TALLSFLGVQALICFCSPNS
Intron Amino Acid Position:
1512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.3
68.8
43.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.3
0.59
0.9
77.7
35.7
Minor 5ss
34.8
-1.7
2.8
37.9
40
Minor BPS
51.8
0.14
1.8
70.51
39.6

Associated Gene:

Gene:
ALS2
Ensembl Gene ID:
ENSAPLG00000009216
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028654
11530279 - 11564582
34304