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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11534478_11535509_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11534478 - 11535509
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
CTATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTCTCTTGACC
Flanking Amino Acid:
SDSRSESPEPGYVVTSFGLL
Intron Amino Acid Position:
1453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
67.6
39.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85.3
0.79
0.7
84.8
29.8
Minor 5ss
32.9
-2
3
32.8
42.1
Minor BPS
77.1
0.84
1.1
83.09
29.6

Associated Gene:

Gene:
ALS2
Ensembl Gene ID:
ENSAPLG00000009216
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028654
11530279 - 11564582
34304
ENSAPLT00000022001
11530279 - 11564582
34304
ENSAPLT00000009633
11530279 - 11564582
34304