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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11538392_11540634_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11538392 - 11540634
Intron Length:
2243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
GTGGCTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCAATTTTAACA
Flanking Amino Acid:
YESEKDKPKVLRKLGILAVP
Intron Amino Acid Position:
1264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
64.5
0.33
1
63.1
42.9
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
65.5
0.48
1.3
68.15
38.4

Associated Gene:

Gene:
ALS2
Ensembl Gene ID:
ENSAPLG00000009216
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028654
11530279 - 11564582
34304
ENSAPLT00000022001
11530279 - 11564582
34304
ENSAPLT00000009633
11530279 - 11564582
34304