Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11546416_11546790_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11546416 - 11546790

Intron Length:

375

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

CCCCCAAATGTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

TTAGGCTAAAAT

Flanking Amino Acid:

VEALSEEAGNVNGLKITTPE

Intron Amino Acid Position:

956

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

79.9

34.9

Major BPS

78.6

0.71

79.6

32.9

Major PPT

0.18

0.9

51.4

30.3

Minor 5ss

38.2

-1.3

52.2

44.4

Minor BPS

47.1

-0.1

2.2

69.74

46.7

Associated Gene:

Gene:

ALS2

Ensembl Gene ID:

ENSAPLG00000009216

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028654

11530279 - 11564582

34304

ENSAPLT00000009633

11530279 - 11564582

34304