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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11555405_11556253_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11555405 - 11556253
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTCA
5'SS Class:
major
3'SS Sequence:
TCATGAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCCTCATGAATT
Flanking Amino Acid:
SPTTVPRLAKVCGDGVWSTA
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
33.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
67.5
0.39
1
63.7
41.6
Minor 5ss
46.6
-0.3
2.4
59.8
44.6
Minor BPS
57.7
0.32
1.8
73.82
43.2

Associated Gene:

Gene:
ALS2
Ensembl Gene ID:
ENSAPLG00000009216
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009633
11530279 - 11564582
34304
ENSAPLT00000028654
11530279 - 11564582
34304
ENSAPLT00000022001
11530279 - 11564582
34304