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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11574294_11575048_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11574294 - 11575048
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTATTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTGCCTCAATT
Flanking Amino Acid:
ETLTFVLEYMHTDLAQYMAQ
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.8
82
34.8
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
65.6
0.57
1.7
79.83
42.7

Associated Gene:

Gene:
CDK15
Ensembl Gene ID:
ENSAPLG00000009047
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009413
11568394 - 11601756
33363