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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11577362_11577927_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11577362 - 11577927
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTT
Flanking Amino Acid:
CLGELKLADFGLACAKFIPS
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.2
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.7
0.74
1
80.7
36.7
Minor 5ss
29.2
-2.4
2.8
32.4
36.1
Minor BPS
65.4
0.56
1.5
80.16
36.3

Associated Gene:

Gene:
CDK15
Ensembl Gene ID:
ENSAPLG00000009047
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009413
11568394 - 11601756
33363