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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11596697_11601646_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11596697 - 11601646
Intron Length:
4950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TATTTTTCTACA
Flanking Amino Acid:
LPPQLYQVPAGQSVLTVPAV
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
89.5
0.89
0.7
84.5
30.1
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
51.8
0.05
1.8
68.03
38.6

Associated Gene:

Gene:
CDK15
Ensembl Gene ID:
ENSAPLG00000009047
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009413
11568394 - 11601756
33363