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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11758593_11759718_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11758593 - 11759718
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
GTTACTAGAAAG
Flanking Amino Acid:
EYIKLKVIGQDSSEIHFKVK
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
81.4
0.71
0.8
80.7
31.3
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
44.7
-0.5
1.8
52.61
41.2

Associated Gene:

Gene:
SUMO1
Ensembl Gene ID:
ENSAPLG00000025650
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046225
11756012 - 11764669
8658