Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11767798_11768916_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11767798 - 11768916

Intron Length:

1119

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTA|GCAACCTCA

5'SS Class:

weak_major

3'SS Sequence:

GTTTTGTCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

GTTTTGTCTACA

Flanking Amino Acid:

SVGSHIFYMLVLNEKKLQEV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.8

0.02

1.4

48.1

42.2

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

0.74

0.9

76.6

37.7

Minor 5ss

41.2

-1

41.9

Minor BPS

44.9

-0.4

2.4

63.85

42.2

Associated Gene:

Gene:

NOP58

Ensembl Gene ID:

ENSAPLG00000008524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019173

11767747 - 11770798

3052

ENSAPLT00000008904

11767747 - 11781129

13383