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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11768994_11770737_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11768994 - 11770737
Intron Length:
1744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTGTTTACAT
Flanking Amino Acid:
EFETPEKANKIVKLKHFEKF
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
69.1
41.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
88.7
0.87
0.6
85.5
21.8
Minor 5ss
42.2
-0.9
2.9
56.7
41
Minor BPS
50.3
0.09
2.1
75.14
41.9

Associated Gene:

Gene:
NOP58
Ensembl Gene ID:
ENSAPLG00000008524
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019173
11767747 - 11770798
3052