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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11772733_11773451_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11772733 - 11773451
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAAGT
5'SS Class:
major
3'SS Sequence:
TTCTACTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCATCATTGACT
Flanking Amino Acid:
ADAKLGGVIKDKLNLSCIHS
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
73.5
37.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83
0.74
0.8
77.3
31
Minor 5ss
29.8
-2.3
2.9
40.9
44.9
Minor BPS
68.1
0.65
1.6
81.36
40.1

Associated Gene:

Gene:
NOP58
Ensembl Gene ID:
ENSAPLG00000008524
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008904
11767747 - 11781129
13383