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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11773589_11774702_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11773589 - 11774702
Intron Length:
1114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
GCTGATGAAACT
Flanking Amino Acid:
MAAMCLGLAHSLSRYKLKFS
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
80.5
0.69
0.8
73.4
37.1
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
39.6
-0.7
2.3
56.57
46.2

Associated Gene:

Gene:
NOP58
Ensembl Gene ID:
ENSAPLG00000008524
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008904
11767747 - 11781129
13383