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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11779062_11779697_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11779062 - 11779697
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGGCCTTGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAGCATTTAATA
Flanking Amino Acid:
GQTTAKNKGKISRMLAAKTA
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
66
0.36
1
60.9
40.1
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
56.7
0.21
1.5
62.91
37.3

Associated Gene:

Gene:
NOP58
Ensembl Gene ID:
ENSAPLG00000008524
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008904
11767747 - 11781129
13383