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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11889260_11889765_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11889260 - 11889765
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTTT
5'SS Class:
major
3'SS Sequence:
CCTTTCCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ACTGCCTGAATC
Flanking Amino Acid:
ALFFGYRMLAGDRKQGLHSM
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
72.3
39.7
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
78.7
0.65
0.8
72.9
31
Minor 5ss
41.3
-1
3.7
64.1
47.4
Minor BPS
59.7
0.28
1.6
65.36
40.6

Associated Gene:

Gene:
BMPR2
Ensembl Gene ID:
ENSAPLG00000008092
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008478
11862747 - 11909476
46730