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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11889858_11891892_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11889858 - 11891892
Intron Length:
2035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
LDLDNLKLLELIGRGRYGAV
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
BMPR2
Ensembl Gene ID:
ENSAPLG00000008092
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008478
11862747 - 11909476
46730