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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_118950_122018_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
118950 - 122018
Intron Length:
3069

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCACGGAGC
5'SS Class:
major
3'SS Sequence:
TGGCACATGGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTTTTTAGGT
Flanking Amino Acid:
AGEHGHGHGHG
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
67.8
40
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
48.4
-0
1.2
46
40.2
Minor 5ss
20.8
-3.4
3.9
24.9
37
Minor BPS
61.6
0.44
1.8
82.89
39

Associated Gene:

Gene:
NDUFB3
Ensembl Gene ID:
ENSAPLG00000015508
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016153
116810 - 122023
5214