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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11898613_11900352_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11898613 - 11900352
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTAAACT
Flanking Amino Acid:
GEEDNAAISEVGTIRYMAPE
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.3
0.79
0.8
77.2
41.6
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
61.9
0.45
1.6
76.8
39.9

Associated Gene:

Gene:
BMPR2
Ensembl Gene ID:
ENSAPLG00000008092
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008478
11862747 - 11909476
46730