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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11901592_11904914_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11901592 - 11904914
Intron Length:
3323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATGG
5'SS Class:
major
3'SS Sequence:
TGTCTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAGAA
U12 Branch Point Sequence:
AATAAGAAAACA
Flanking Amino Acid:
FPEAWKENSLAVRSLKETIE
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
61.2
40.1
Major BPS
49.7
-0
1
47.1
36.1
Major PPT
73.6
0.53
1
69.6
36.7
Minor 5ss
32
-2.1
3
35.2
43.3
Minor BPS
36.7
-1
2.4
49.99
40.3

Associated Gene:

Gene:
BMPR2
Ensembl Gene ID:
ENSAPLG00000008092
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008478
11862747 - 11909476
46730