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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11932471_11935924_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11932471 - 11935924
Intron Length:
3454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCCGG
5'SS Class:
major
3'SS Sequence:
CTCCTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAT
Flanking Amino Acid:
MRDKATQTESAWAEEYL
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
54.5
49.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.6
0.69
0.8
74.8
33.6
Minor 5ss
35.9
-1.6
3.3
47.2
48.2
Minor BPS
73.6
0.82
1.3
85.52
34.2

Associated Gene:

Gene:
FAM117B
Ensembl Gene ID:
ENSAPLG00000007980
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008289
11932450 - 11944476
12027