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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11936018_11936519_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11936018 - 11936519
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGGAGT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTCTTTATTA
Flanking Amino Acid:
SWGSTDQLKEIAKLRQQLQR
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
74.6
41.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
84.5
0.78
0.8
86.2
26.5
Minor 5ss
30.3
-2.2
3
40.9
45
Minor BPS
73.6
0.74
1.5
82.84
32.3

Associated Gene:

Gene:
FAM117B
Ensembl Gene ID:
ENSAPLG00000007980
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008289
11932450 - 11944476
12027