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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11936634_11942324_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11936634 - 11942324
Intron Length:
5691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TCTGGCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAAATAAATCT
Flanking Amino Acid:
GNHAAINHSQAPVPKSALVP
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.5
0.62
0.9
73.4
37.1
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
39.1
-0.7
2.1
59.49
43.4

Associated Gene:

Gene:
FAM117B
Ensembl Gene ID:
ENSAPLG00000007980
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008289
11932450 - 11944476
12027