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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11942469_11943376_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11942469 - 11943376
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTATGTATC
5'SS Class:
major
3'SS Sequence:
TTATTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
ETGDKEEQLVPQDIPDGHRA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
72.6
36.4
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
83.9
0.76
0.9
81.2
35
Minor 5ss
49
-0.1
2.5
68.8
35.7
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
FAM117B
Ensembl Gene ID:
ENSAPLG00000007980
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008289
11932450 - 11944476
12027