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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11976407_11977238_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11976407 - 11977238
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTGTTTTACCA
Flanking Amino Acid:
DNIVKLWDTRSCKAPLYDLA
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.9
0.61
1
70.3
44.5
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
55.1
0.16
1.7
66.82
40.3

Associated Gene:

Gene:
WDR12
Ensembl Gene ID:
ENSAPLG00000007646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007974
11975663 - 11983161
7499