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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11977372_11978187_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11977372 - 11978187
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAACAA
5'SS Class:
major
3'SS Sequence:
CTCTTTTGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
ATCTGCTGAGTA
Flanking Amino Acid:
HIRLWDPRSKDGSLVLLSLT
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
66.3
34.5
Major BPS
67.6
0.44
1.2
75
40
Major PPT
82.3
0.73
0.9
75.9
38
Minor 5ss
25.2
-2.9
2.9
29.5
43.2
Minor BPS
46
-0.3
2
58.37
41.7

Associated Gene:

Gene:
WDR12
Ensembl Gene ID:
ENSAPLG00000007646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007974
11975663 - 11983161
7499