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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11978294_11978408_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11978294 - 11978408
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGATCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTATTCATTT
Flanking Amino Acid:
AETGGLKSTLTGNKVFNFVS
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
69.2
30.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
32.9
-1.9
3
36.6
41.5
Minor BPS
48.5
-0
1.9
71.49
39.8

Associated Gene:

Gene:
WDR12
Ensembl Gene ID:
ENSAPLG00000007646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007974
11975663 - 11983161
7499