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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11978550_11978748_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11978550 - 11978748
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGATACTCAATC
Flanking Amino Acid:
QKTEQLGLTRTPLATLSGHT
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
39.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.4
0.59
0.9
67.8
42.5
Minor 5ss
36.9
-1.5
3
39.1
46.1
Minor BPS
55.7
0.16
1.7
65.86
39.3

Associated Gene:

Gene:
WDR12
Ensembl Gene ID:
ENSAPLG00000007646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007974
11975663 - 11983161
7499