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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11979534_11980286_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11979534 - 11980286
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CAACTTTTAACA
Flanking Amino Acid:
SIAVDCTRTKFCSGSWDKML
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
74.7
28.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.6
0.87
0.7
83.3
31.6
Minor 5ss
29.2
-2.4
3.1
34.7
35.4
Minor BPS
60.9
0.34
1.3
62.29
37.7

Associated Gene:

Gene:
WDR12
Ensembl Gene ID:
ENSAPLG00000007646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007974
11975663 - 11983161
7499