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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11981079_11981952_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11981079 - 11981952
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACCACAG
5'SS Class:
weak_major
3'SS Sequence:
CTGTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATGCTTCAAAT
Flanking Amino Acid:
WISSVQATEEWILTGCYDQT
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.5
0.18
1.2
46.3
43.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.1
0.72
0.9
76.5
37.2
Minor 5ss
35.9
-1.6
3.3
44.3
45.4
Minor BPS
51.7
0.13
1.7
69.25
41.4

Associated Gene:

Gene:
WDR12
Ensembl Gene ID:
ENSAPLG00000007646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007974
11975663 - 11983161
7499