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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_11991783_11992828_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11991783 - 11992828
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
SLTVSKKTTTRMLEDPFPIP
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
74.9
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
CARF
Ensembl Gene ID:
ENSAPLG00000007561
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007840
11990394 - 12010611
20218