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Intron Name: Anas_platyrhynchos_platyrhynchos_7_11997610_11999767_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11997610 - 11999767

Intron Length:

2158

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAA

U12 Branch Point Sequence:

GGTTGCTCAAAT

Flanking Amino Acid:

PYDGIPFVNAGSRAIVMECQ

Intron Amino Acid Position:

176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

1.1

81.4

32.7

Major BPS

70.6

0.51

1.1

71.6

36.4

Major PPT

87.3

0.84

0.8

80.5

Minor 5ss

41.6

-0.9

2.6

43.3

Minor BPS

49.8

0.06

2.1

71.62

44.4

Associated Gene:

Gene:

CARF

Ensembl Gene ID:

ENSAPLG00000007561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007840

11990394 - 12010611

20218