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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12000820_12001269_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12000820 - 12001269
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACTTT
5'SS Class:
major
3'SS Sequence:
TCCTTCTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
AATTGCGTATAG
Flanking Amino Acid:
KNSIDAGGVLRWYVQLPTQQ
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
77.2
33.9
Major BPS
62.2
0.3
1
59
38
Major PPT
77.7
0.62
0.9
72.3
37.8
Minor 5ss
43.7
-0.7
3.2
64.1
47.4
Minor BPS
39.3
-0.9
2.5
48.09
44.9

Associated Gene:

Gene:
CARF
Ensembl Gene ID:
ENSAPLG00000007561
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007840
11990394 - 12010611
20218