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Intron Name: Anas_platyrhynchos_platyrhynchos_7_12001504_12001910_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12001504 - 12001910

Intron Length:

407

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACAGAGA

5'SS Class:

major

3'SS Sequence:

TAACATGCGACAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTCCTTTAACA

Flanking Amino Acid:

EQVYAVRKQLRKYVERELFK

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

63.1

42.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

56.3

0.14

1.1

50.1

43.2

Minor 5ss

29.9

-2.3

3.3

40.1

45.6

Minor BPS

78.6

0.89

1.1

81.83

32.7

Associated Gene:

Gene:

CARF

Ensembl Gene ID:

ENSAPLG00000007561

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007840

11990394 - 12010611

20218