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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12002074_12003017_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12002074 - 12003017
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTTGG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTCTGAGAACT
Flanking Amino Acid:
VYNSESIPATLQWTTDSGNI
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
61.2
46
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
39
-1.2
3
49.3
46.9
Minor BPS
46.2
-0.2
2.3
75.17
41.1

Associated Gene:

Gene:
CARF
Ensembl Gene ID:
ENSAPLG00000007561
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007840
11990394 - 12010611
20218