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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12003094_12006276_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12003094 - 12006276
Intron Length:
3183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGACTG
5'SS Class:
major
3'SS Sequence:
GGGAGCTCACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTCTATTTATT
Flanking Amino Acid:
TVTFASPTSAAESVVTKGES
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
59.1
45.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
51.4
0.03
1.1
40.5
43.8
Minor 5ss
34.3
-1.8
3.5
44.3
44.5
Minor BPS
49
0
1.9
71.12
39.4

Associated Gene:

Gene:
CARF
Ensembl Gene ID:
ENSAPLG00000007561
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007840
11990394 - 12010611
20218