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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12006396_12007850_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12006396 - 12007850
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTCA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
TTCTCTTTCACA
Flanking Amino Acid:
LQPKIFAQLQGLQLQSTSTS
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.8
38.2
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
87.1
0.83
0.7
83
25.6
Minor 5ss
35.3
-1.7
3.5
47.9
47.7
Minor BPS
68.9
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
CARF
Ensembl Gene ID:
ENSAPLG00000007561
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007840
11990394 - 12010611
20218