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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12008218_12010492_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12008218 - 12010492
Intron Length:
2275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGAACTTTAATG
Flanking Amino Acid:
VRIVDSHPALTEENTEGVIC
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
77.7
31.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.6
0.58
1.1
79.2
38.4
Minor 5ss
46.6
-0.3
2.7
63.3
36.2
Minor BPS
63.3
0.28
1.4
61.78
40.2

Associated Gene:

Gene:
CARF
Ensembl Gene ID:
ENSAPLG00000007561
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007840
11990394 - 12010611
20218