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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12046784_12055124_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12046784 - 12055124
Intron Length:
8341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
TTGTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTAATGGTAATG
Flanking Amino Acid:
TKGEDIQGNTEHKTTFPNIL
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
74.5
35.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.5
0.8
0.8
77.9
36.6
Minor 5ss
38.5
-1.3
2.3
44.3
43
Minor BPS
41.6
-0.7
2.5
51.97
43.1

Associated Gene:

Gene:
PLEKHM3
Ensembl Gene ID:
ENSAPLG00000007354
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007625
12046180 - 12076280
30101