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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12056061_12070094_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12056061 - 12070094
Intron Length:
14034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAC
U12 Branch Point Sequence:
TATTGTACAAAC
Flanking Amino Acid:
GLTVQSFKCAGCQRPIGLSN
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
59.6
0.24
1
65.2
28.2
Major PPT
80.6
0.69
0.7
72.4
32.3
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
43
-0.5
2.1
58.2
40.2

Associated Gene:

Gene:
PLEKHM3
Ensembl Gene ID:
ENSAPLG00000007354
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007625
12046180 - 12076280
30101