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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12070241_12075995_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12070241 - 12075995
Intron Length:
5755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
CCCATCTAAATT
Flanking Amino Acid:
VHNWDTSKYKVSKQAKEFLE
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
68.6
37.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
45.2
-0.5
2.8
60.5
44
Minor BPS
48.3
-0
1.7
58.96
45.2

Associated Gene:

Gene:
PLEKHM3
Ensembl Gene ID:
ENSAPLG00000007354
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007625
12046180 - 12076280
30101