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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12076190_12076234_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12076190 - 12076234
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TACAAGAATGTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGACAA
U12 Branch Point Sequence:
AGTACAAGAATG
Flanking Amino Acid:
RAAVAEDLRRSVLVTLFFLF
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
50.6
0.02
1.2
59
38
Major PPT
52.6
0.06
1
44.6
40.8
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
41.8
-0.7
1.9
47.22
38.9

Associated Gene:

Gene:
PLEKHM3
Ensembl Gene ID:
ENSAPLG00000007354
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007625
12046180 - 12076280
30101