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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12137866_12139992_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12137866 - 12139992
Intron Length:
2127

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGGACC
5'SS Class:
strong_major
3'SS Sequence:
GGTGTGCCAGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTCCAA
U12 Branch Point Sequence:
CCGCTTCCAAGG
Flanking Amino Acid:
AAAALGSLQQITVPMCKGIG
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
82.1
26.5
Major BPS
55.8
0.14
1.3
68.1
38
Major PPT
45
-0.2
1.7
44.3
42.4
Minor 5ss
21.8
-3.2
4
34.1
41.8
Minor BPS
34.3
-1.3
1.7
28.27
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001632
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021374
12137716 - 12142928
5213