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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12140389_12140496_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12140389 - 12140496
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCCAAGGAC
5'SS Class:
weak_major
3'SS Sequence:
CCCCATCTCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGATCCCCATCT
Flanking Amino Acid:
PPFFGKPTRPESHPLYNRDE
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.2
0.19
1.3
58.1
40.9
Major BPS
71.2
0.53
1
61
37.5
Major PPT
58.2
0.19
1
55
33.8
Minor 5ss
14.4
-4.1
3.7
23.7
37.5
Minor BPS
47.8
-0
2.1
71.34
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001632
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001622
12137145 - 12141618
4474