Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_12157195_12159264_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12157195 - 12159264

Intron Length:

2070

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TAGATCTTAATT

Flanking Amino Acid:

LTAECAIVTLVYLERLLTYA

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.9

31.6

Major BPS

0.92

0.9

86.2

29.1

Major PPT

94.7

1.01

0.5

91.9

19.2

Minor 5ss

32.2

-2

3.5

44.1

44.7

Minor BPS

69.6

0.69

1.3

77.44

39.2

Associated Gene:

Gene:

CCNYL1

Ensembl Gene ID:

ENSAPLG00000007167

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024753

12148939 - 12169307

20369

ENSAPLT00000007460

12148939 - 12171822

22884